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#1 Re: Multiwfn and wavefunction analysis » Discrepancy in density cube files generated by xTB & Multiwfn » 2023-01-26 14:18:35

Dear Tian, thanks a lot for running those experiments. Good call to check the total # of electrons.

#2 Re: Multiwfn and wavefunction analysis » Discrepancy in density cube files generated by xTB & Multiwfn » 2023-01-25 10:55:20

You can use the following:

$write
   density=true
$cube
    step=0.05

It took me a while to find this as well, but https://github.com/grimme-lab/xtb/blob/ … rol.7.adoc provides a good reference.

#3 Re: Multiwfn and wavefunction analysis » Discrepancy in density cube files generated by xTB & Multiwfn » 2023-01-25 10:09:38

I'm using the command "xtb water.sdf --input xtb.inp --molden --verbose" where the xtb.inp file contains a line "density=true" in the "$write" block. A step-by-step procedure is shown here: https://github.com/grimme-lab/xtb/issues/586 (the issue I opened in the xTB repo).

#4 Re: Multiwfn and wavefunction analysis » Discrepancy in density cube files generated by xTB & Multiwfn » 2023-01-23 13:56:11

The wavefunction is loaded correctly, according to the checks in Appendix 5.

I noticed that I cannot find all (3, -3) critical points in water following an xTB calculation (starting the search at the atom positions). Looking at the density isosurfaces generated from the cubes files from xTB and Multiwfn respectively (both with isovalue 0.082 in VMD), it seems that the Multiwfn-generated cube file does indeed not have a maximum at the hydrogen nuclei which seems counterintuitive to me (while the xTB-generated one shows maxima). Could search for those (3, -3) critical points with other search parameters be more successful?
Screenshot-2023-01-23-at-14-52-11.png

#5 Multiwfn and wavefunction analysis » Compatibility with DFTB+ » 2023-01-23 11:21:12

clemens
Replies: 1

Dear all,

Is it possible to combine DFTB+ calculations (https://github.com/dftbplus/dftbplus, https://dftbplus-recipes.readthedocs.io … ndex.html) with Multiwfn analysis? I did not find any information through a web search, and DFTB+ does not seem to output wavefunction files (FCHK or so). 

Thanks for your help and best,
Clemens

#6 Re: Multiwfn and wavefunction analysis » Discrepancy in density cube files generated by xTB & Multiwfn » 2022-07-06 12:10:15

Thank you very much for the detailed answer, and apologies for my late reply. I have now tried the suggested steps (using latest version of Multiwfn, 3.8). Interestingly, the difference between xTB and Multiwfn persists also when I set isupplyEDF=0 in settings.ini ("Loading electron density functions..." isn't shown anymore during startup of Multiwfn).

Also, I get the same cube files from Multiwfn independent of whether I set isupplyEDF to 0 or 2 (though the message during startup changes, so the settings.ini file is read correctly). In each case it says that "This file is found to be generated by xtb! Special treatment is applied...", though only if isupplyEDF = 2 it also says "Loading electron density functions (EDF) information from built-in EDF library".

Perhaps the discrepancy is indeed on the xTB side for generating the cube files.

#7 Multiwfn and wavefunction analysis » Discrepancy in density cube files generated by xTB & Multiwfn » 2022-02-23 13:36:16

clemens
Replies: 10

I noticed a discrepancy in the density cube files generated either directly with GFN2-xTB or with Multiwfn from the xtb-created molden.input file. I have provided a detailed description with input files and steps to reproduce on xTB's Github page, since I am not sure on which side (xTB or Multiwfn) this discrepancy originates:
https://github.com/grimme-lab/xtb/issues/586

I'd be thankful for any suggestions as to why this might be happening.

#8 Re: Multiwfn and wavefunction analysis » Send output from batch processing to file » 2022-02-02 15:40:52

Thanks for your help! Just wanted to check before writing this up smile

#9 Multiwfn and wavefunction analysis » Send output from batch processing to file » 2022-01-25 08:10:36

clemens
Replies: 2

Dear all,

Is there a way to send the output from a specific operation (e.g. "Print summary of paths" in "Topology analysis"/"Modify or print details or export paths") to an output file while running Multiwfn in batch mode? So far I only managed to save files for which an export option exists in the program.

Of course I could send stdout of the entire batch operation to some file, but this would involve some heavy text parsing afterwards and I was wondering if there was an easier way.

Thank you and best,
Clemens

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